Publications

This page contains a list of research articles published by members of the Oxford RSE team, grouped by project.

PyBAMM

Sulzer, V., Marquis, S. G., Timms, R., Robinson, M., & Chapman, S. J. (2021). Python Battery Mathematical Modelling (PyBaMM). Journal of Open Research Software, 9(1), 14. https://doi.org/10.5334/jors.309

Petrushka

Ostinelli, E. G., Jaquiery, M., Liu, Q., Elgarf, R., Haque, N., Potts, J., Li, Z., Efthimiou, O., Markham, S., Ede, R., Wainwright, L., Fernandes, K. B. P., Fernandes, B. B. P., Dalaqua, P. V. C., Tomlinson, A., Smith, K. A., Zangani, C., De Crescenzo, F., Liboni, M., … Cipriani, A. (2025). Personalising Antidepressant Treatment for Unipolar Depression Combining Individual Choices, Risks and big Data: The PETRUSHKA Tool: Personnalisation du traitement antidépresseur de la dépression unipolaire associant choix individuels, risques et mégadonnées: l’outil PETRUSHKA. The Canadian Journal of Psychiatry. https://doi.org/10.1177/07067437251322399

POSEIDON

Carrella, E., Powers, J., Saul, S., Bailey, R. M., Payette, N., Vert-pre, K. A., Ananthanarayanan, A., Drexler, M., Dorsett, C., & Madsen, J. K. (2024). Rejection sampling and agent-based models for data limited fisheries. Frontiers in Marine Science, 11. https://doi.org/10.3389/fmars.2024.1243954
Madsen, J. K., Powers, B., Bailey, R., Carrella, E., Payette, N., & Pilditch, T. (2024). Modelling Adaptive and Anticipatory Human Decision-Making in Complex Human-Environment Systems. Journal of Artificial Societies and Social Simulation, 27(1). https://doi.org/10.18564/jasss.5214
Payette, N., Carella, E., Vert-Pre, K., Powers, B., Saul, S., Drexler, M., Ananthanarayanan, A., & Bailey, R. (2023). Attracted to Fish: A Gravity-Based Model of Purse-Seine Vessel Behaviour. In Springer Proceedings in Complexity (pp. 87–103). Springer Nature Switzerland. https://doi.org/10.1007/978-3-031-34920-1_8

OxMET

Webb, S. S., Jespersen, A., Chiu, E. G., Payne, F., Basting, R., Duta, M. D., & Demeyere, N. (2021). The Oxford digital multiple errands test (OxMET): Validation of a simplified computer tablet based multiple errands test. Neuropsychological Rehabilitation, 32(6), 1007–1032. https://doi.org/10.1080/09602011.2020.1862679

OCSPlus

Demeyere, N., Haupt, M., Webb, S. S., Strobel, L., Milosevich, E. T., Moore, M. J., Wright, H., Finke, K., & Duta, M. D. (2021). Introducing the tablet-based Oxford Cognitive Screen-Plus (OCS-Plus) as an assessment tool for subtle cognitive impairments. Scientific Reports, 11(1). https://doi.org/10.1038/s41598-021-87287-8
Humphreys, G. W., Duta, M. D., Montana, L., Demeyere, N., McCrory, C., Rohr, J., Kahn, K., Tollman, S., & Berkman, L. (2016). Cognitive Function in Low-Income and Low-Literacy Settings: Validation of the Tablet-Based Oxford Cognitive Screen in the Health and Aging in Africa: A Longitudinal Study of an INDEPTH Community in South Africa (HAALSI). The Journals of Gerontology Series B: Psychological Sciences and Social Sciences, 72(1), 38–50. https://doi.org/10.1093/geronb/gbw139
Webb, S. S., Jespersen, A., Chiu, E. G., Payne, F., Basting, R., Duta, M. D., & Demeyere, N. (2021). The Oxford digital multiple errands test (OxMET): Validation of a simplified computer tablet based multiple errands test. Neuropsychological Rehabilitation, 32(6), 1007–1032. https://doi.org/10.1080/09602011.2020.1862679

LanguageScreen

Hulme, C., West, G., Rios Diaz, M., Hearne, S., Korell, C., Duta, M., & Snowling, M. J. (2025). The Nuffield Early Language Intervention (NELI) programme is associated with lasting improvements in children’s language and reading skills. Journal of Child Psychology and Psychiatry. https://doi.org/10.1111/jcpp.14157
West, G., Lervåg, A., Birchenough, J. M. H., Korell, C., Rios Diaz, M., Duta, M., Cripps, D., Gardner, R., Fairhurst, C., & Hulme, C. (2024). Oral language enrichment in preschool improves children’s language skills: a cluster randomised controlled trial. Journal of Child Psychology and Psychiatry, 65(8), 1087–1097. https://doi.org/10.1111/jcpp.13947
Hulme, C., McGrane, J., Duta, M., West, G., Cripps, D., Dasgupta, A., Hearne, S., Gardner, R., & Snowling, M. (2024). LanguageScreen: The Development, Validation, and Standardization of an Automated Language Assessment App. Language, Speech, and Hearing Services in Schools, 55(3), 904–917. https://doi.org/10.1044/2024_lshss-24-00004
West, G., Lervåg, A., Snowling, M. J., Buchanan-Worster, E., Duta, M., & Hulme, C. (2022). Early language intervention improves behavioral adjustment in school: Evidence from a cluster randomized trial. Journal of School Psychology, 92, 334–345. https://doi.org/10.1016/j.jsp.2022.04.006

Global.health

Kraemer, M. U. G., Tsui, J. L.-H., Chang, S. Y., Lytras, S., Khurana, M. P., Vanderslott, S., Bajaj, S., Scheidwasser, N., Curran-Sebastian, J. L., Semenova, E., Zhang, M., Unwin, H. J. T., Watson, O. J., Mills, C., Dasgupta, A., Ferretti, L., Scarpino, S. V., Koua, E., Morgan, O., … Bhatt, S. (2025). Artificial intelligence for modelling infectious disease epidemics. Nature, 638(8051), 623–635. https://doi.org/10.1038/s41586-024-08564-w
Tsui, J. L.-H., Pena, R. E., Moir, M., Inward, R. P. D., Wilkinson, E., San, J. E., Poongavanan, J., Bajaj, S., Gutierrez, B., Dasgupta, A., de Oliveira, T., Kraemer, M. U. G., Tegally, H., & Sambaturu, P. (2024). Impacts of climate change-related human migration on infectious diseases. Nature Climate Change, 14(8), 793–802. https://doi.org/10.1038/s41558-024-02078-z
Gonçalves, B. P., Jassat, W., Baruch, J., Hashmi, M., Rojek, A., Dasgupta, A., Martin-Loeches, I., Reyes, L. F., Piubelli, C., Citarella, B. W., Kartsonaki, C., Lefèvre, B., López Revilla, J. W., Lunn, M., Harrison, E. M., Kraemer, M. U. G., Shrapnel, S., Horby, P., Bisoffi, Z., … Zambon, M. (2023). A multi-country analysis of COVID-19 hospitalizations by vaccination status. Med, 4(11), 797-812.e2. https://doi.org/10.1016/j.medj.2023.08.005
Tsui, J. L.-H., McCrone, J. T., Lambert, B., Bajaj, S., Inward, R. P. D., Bosetti, P., Pena, R. E., Tegally, H., Hill, V., Zarebski, A. E., Peacock, T. P., Liu, L., Wu, N., Davis, M., Bogoch, I. I., Khan, K., Kall, M., Abdul Aziz, N. I. B., Colquhoun, R., … Kraemer, M. U. G. (2023). Genomic assessment of invasion dynamics of SARS-CoV-2 Omicron BA.1. Science, 381(6655), 336–343. https://doi.org/10.1126/science.adg6605
Schultheiss, M., Han, A., Varrelman, T., Sewalk, K., Dasgupta, A., Sheldon, J., Pigott, D., Zarzeczny, M., Brownstein, J., & Kraemer, M. (2023). GLOBAL HEALTH: AN AGILE OPEN-SOURCE REPOSITORY OF INFECTIOUS DISEASE OUTBREAKS TO SUPPORT GLOBAL SURVEILLANCE AND RESEARCH EFFORTS. International Journal of Infectious Diseases, 130, S77. https://doi.org/10.1016/j.ijid.2023.04.191
Inward, R. P. D., Jackson, F., Dasgupta, A., Lee, G., Battle, A. L., Parag, K. V., & Kraemer, M. U. G. (2022). Impact of spatiotemporal heterogeneity in COVID-19 disease surveillance on epidemiological parameters and case growth rates. Epidemics, 41, 100627. https://doi.org/10.1016/j.epidem.2022.100627
Gonçalves, B. P., Hall, M., Jassat, W., Balan, V., Murthy, S., Kartsonaki, C., Semple, M. G., Rojek, A., Baruch, J., Reyes, L. F., Dasgupta, A., Dunning, J., Citarella, B. W., Pritchard, M., Martín-Quiros, A., Sili, U., Baillie, J. K., Aryal, D., Arabi, Y., … Olliaro, P. L. (2022). An international observational study to assess the impact of the Omicron variant emergence on the clinical epidemiology of COVID-19 in hospitalised patients. eLife, 11. https://doi.org/10.7554/elife.80556
Kraemer, M. U. G., Tegally, H., Pigott, D. M., Dasgupta, A., Sheldon, J., Wilkinson, E., Schultheiss, M., Han, A., Oglia, M., Marks, S., Kanner, J., O’Brien, K., Dandamudi, S., Rader, B., Sewalk, K., Bento, A. I., Scarpino, S. V., de Oliveira, T., Bogoch, I. I., … Brownstein, J. S. (2022). Tracking the 2022 monkeypox outbreak with epidemiological data in real-time. The Lancet Infectious Diseases, 22(7), 941–942. https://doi.org/10.1016/s1473-3099(22)00359-0